Package: o2plsda 0.0.25
o2plsda: Multiomics Data Integration
Provides functions to do 'O2PLS-DA' analysis for multiple omics data integration. The algorithm came from "O2-PLS, a two-block (X±Y) latent variable regression (LVR) method with an integral OSC filter" which published by Johan Trygg and Svante Wold at 2003 <doi:10.1002/cem.775>. 'O2PLS' is a bidirectional multivariate regression method that aims to separate the covariance between two data sets (it was recently extended to multiple data sets) (Löfstedt and Trygg, 2011 <doi:10.1002/cem.1388>; Löfstedt et al., 2012 <doi:10.1016/j.aca.2013.06.026>) from the systematic sources of variance being specific for each data set separately.
Authors:
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o2plsda.pdf |o2plsda.html✨
o2plsda/json (API)
# Install 'o2plsda' in R: |
install.packages('o2plsda', repos = c('https://guokai8.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/guokai8/o2plsda/issues
integrationmulti-omicso2plsomicsplsda
Last updated 1 months agofrom:3934db5a54. Checks:OK: 1 NOTE: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 08 2024 |
R-4.5-win-x86_64 | NOTE | Nov 08 2024 |
R-4.5-linux-x86_64 | NOTE | Nov 08 2024 |
R-4.4-win-x86_64 | NOTE | Nov 08 2024 |
R-4.4-mac-x86_64 | NOTE | Nov 08 2024 |
R-4.4-mac-aarch64 | NOTE | Nov 08 2024 |
R-4.3-win-x86_64 | NOTE | Nov 08 2024 |
R-4.3-mac-x86_64 | NOTE | Nov 08 2024 |
R-4.3-mac-aarch64 | NOTE | Nov 08 2024 |
Exports:AtAcolsdscolumn_sumseigenmulteigenthreegetMCCV_cpploadingsloadings.O2plsloadings.o2plsdaloadings.plsdao2cvo2plsoplsoplsdaorder_cpporder_strplot.O2plsplot.o2plsdaplot.plsdaplsdaprint.O2plsprint.plsdaQrcpp_rmses2sample_cppsample_lapplyscoresscores.O2plsscores.o2plsdascores.plsdasort_strsplit_strsummary.O2plssummary.plsdaunlist_cppvip
Dependencies:clicolorspacedplyrfansifarvergenericsggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppArmadillorlangscalestibbletidyselectutf8vctrsviridisLitewithr