VennDetail - Comprehensive Visualization and Analysis of Multi-Set Intersections

A comprehensive package for visualizing multi-set intersections and extracting detailed subset information. VennDetail generates high-resolution visualizations including traditional Venn diagrams, Venn-pie plots, and UpSet-style plots. It provides functions to extract and combine subset details with user datasets in various formats. The package is particularly useful for bioinformatics applications but can be used for any multi-set analysis.

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datarepresentationgraphandnetworkvisualizationsoftwareextractvenndiagram

8.13 score 30 stars 111 scripts 434 downloads

microbial - Do 16s Data Analysis and Generate Figures

Provides functions to enhance the available statistical analysis procedures in R by providing simple functions to analysis and visualize the 16S rRNA data.Here we present a tutorial with minimum working examples to demonstrate usage and dependencies.

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softwaregraphandnetworkmicrobiomemicrobiome-analysis

5.71 score 15 stars 34 scripts 305 downloads

o2plsda - Multiomics Data Integration

Provides functions to do 'O2PLS-DA' analysis for multiple omics data integration. The algorithm came from "O2-PLS, a two-block (X±Y) latent variable regression (LVR) method with an integral OSC filter" which published by Johan Trygg and Svante Wold at 2003 <doi:10.1002/cem.775>. 'O2PLS' is a bidirectional multivariate regression method that aims to separate the covariance between two data sets (it was recently extended to multiple data sets) (Löfstedt and Trygg, 2011 <doi:10.1002/cem.1388>; Löfstedt et al., 2012 <doi:10.1016/j.aca.2013.06.026>) from the systematic sources of variance being specific for each data set separately.

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integrationmulti-omicso2plsomicsplsdaopenblascppopenmp

4.90 score 8 stars 20 scripts 272 downloads

eoffice - Export or Graph and Tables to 'Microsoft' Office and Import Figures and Tables

Provides wrap functions to export and import graphics and data frames in R to 'microsoft' office. And This package also provide write out figures with lots of different formats. Since people may work on the platform without GUI support, the package also provide function to easily write out figures to lots of different type of formats. Now this package provide function to extract colors from all types of figures and pdf files.

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4.09 score 1 stars 182 scripts 1.4k downloads

fctutils - Advanced Factor Manipulation Utilities

Provides a collection of utility functions for manipulating and analyzing factor vectors in R. It offers tools for filtering, splitting, combining, and reordering factor levels based on various criteria. The package is designed to simplify common tasks in categorical data analysis, making it easier to work with factors in a flexible and efficient manner.

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4.00 score 2 stars 5 scripts 178 downloads